Software packages

Ilastik: a simple, user-friendly tool for interactive image classification, segmentation and analysis. ilastik is developed by the Hamprecht lab.

MorphoGraphX: an open source application for the visualization and analysis of 4D biological datasets. It is primarily used for the analysis and quantification of 4D live-imaged confocal data, in particular:

  • Organ and cell shape extraction
  • Growth analysis
  • Fluorescence signal quantification
  • Protein localization
  • Extracting simplified cell geometry for modeling

MorphoGraphX is developed in Smith lab at the MPIPZ Cologne.

FOR2581 logo

The logo of the FOR2581 can be downloaded here: FOR2581 Logo (vector and bitmap)